This page was generated from source/references.ipynb. Binder badge or Colab badge

References§

BFL+20

Nicholas J Bernstein, Nicole L Fong, Irene Lam, Margaret A Roy, David G Hendrickson, and David R Kelley. Solo: doublet identification in Single-Cell RNA-Seq via Semi-Supervised deep learning. Cell Syst, 11(1):95–101.e5, July 2020. doi:10.1016/j.cels.2020.05.010.

GCJ+17

Jianjiong Gao, Matthew T Chang, Hannah C Johnsen, Sizhi Paul Gao, Brooke E Sylvester, Selcuk Onur Sumer, Hongxin Zhang, David B Solit, Barry S Taylor, Nikolaus Schultz, and Chris Sander. 3D clusters of somatic mutations in cancer reveal numerous rare mutations as functional targets. Genome Med., 9(1):4, January 2017. doi:10.1186/s13073-016-0393-x.

LRC+18

Romain Lopez, Jeffrey Regier, Michael B Cole, Michael I Jordan, and Nir Yosef. Deep generative modeling for single-cell transcriptomics. Nat. Methods, 15(12):1053–1058, December 2018. doi:10.1038/s41592-018-0229-2.

MBH+21

Johannes C Melms, Jana Biermann, Huachao Huang, Yiping Wang, Ajay Nair, Somnath Tagore, Igor Katsyv, André F Rendeiro, Amit Dipak Amin, Denis Schapiro, Chris J Frangieh, Adrienne M Luoma, Aveline Filliol, Yinshan Fang, Hiranmayi Ravichandran, Mariano G Clausi, George A Alba, Meri Rogava, Sean W Chen, Patricia Ho, Daniel T Montoro, Adam E Kornberg, Arnold S Han, Mathieu F Bakhoum, Niroshana Anandasabapathy, Mayte Suárez-Fariñas, Samuel F Bakhoum, Yaron Bram, Alain Borczuk, Xinzheng V Guo, Jay H Lefkowitch, Charles Marboe, Stephen M Lagana, Armando Del Portillo, Emily J Tsai, Emmanuel Zorn, Glen S Markowitz, Robert F Schwabe, Robert E Schwartz, Olivier Elemento, Anjali Saqi, Hanina Hibshoosh, Jianwen Que, and Benjamin Izar. A molecular single-cell lung atlas of lethal COVID-19. Nature, 595(7865):114–119, July 2021. doi:10.1038/s41586-021-03569-1.

VRT+21

Isaac Virshup, Sergei Rybakov, Fabian J Theis, Philipp Angerer, and F Alexander Wolf. Anndata: annotated data. bioRxiv, pages 2021.12.16.473007, December 2021. doi:10.1101/2021.12.16.473007.

WAT18

F Alexander Wolf, Philipp Angerer, and Fabian J Theis. SCANPY: large-scale single-cell gene expression data analysis. Genome Biol., 19(1):15, December 2018. doi:10.1186/s13059-017-1382-0.

See the bib file for details.